Package: rirods 0.2.0
Martin Schobben
rirods: R Client for 'iRODS'
The open sourced data management software 'Integrated Rule-Oriented Data System' ('iRODS') offers solutions for the whole data life cycle (<https://irods.org/>). The loosely constructed and highly configurable architecture of 'iRODS' frees the user from strict formatting constraints and single-vendor solutions. This package provides an interface to the 'iRODS' HTTP API, allowing you to manage your data and metadata in 'iRODS' with R. Storage of annotated files and R objects in 'iRODS' ensures findability, accessibility, interoperability, and reusability of data.
Authors:
rirods_0.2.0.tar.gz
rirods_0.2.0.zip(r-4.5)rirods_0.2.0.zip(r-4.4)rirods_0.2.0.zip(r-4.3)
rirods_0.2.0.tgz(r-4.5-any)rirods_0.2.0.tgz(r-4.4-any)rirods_0.2.0.tgz(r-4.3-any)
rirods_0.2.0.tar.gz(r-4.5-noble)rirods_0.2.0.tar.gz(r-4.4-noble)
rirods_0.2.0.tgz(r-4.4-emscripten)rirods_0.2.0.tgz(r-4.3-emscripten)
rirods.pdf |rirods.html✨
rirods/json (API)
NEWS
| # Install 'rirods' in R: |
| install.packages('rirods', repos = c('https://irods.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/irods/irods_client_library_rirods/issues
Pkgdown site:https://rirods.irods4r.org
Last updated 1 years agofrom:defa2cab65. Checks:1 OK, 8 NOTE. Indexed: yes.
| Target | Result | Latest binary |
|---|---|---|
| Doc / Vignettes | OK | Mar 12 2025 |
| R-4.5-win | NOTE | Mar 12 2025 |
| R-4.5-mac | NOTE | Mar 12 2025 |
| R-4.5-linux | NOTE | Mar 12 2025 |
| R-4.4-win | NOTE | Mar 12 2025 |
| R-4.4-mac | NOTE | Mar 12 2025 |
| R-4.4-linux | NOTE | Mar 12 2025 |
| R-4.3-win | NOTE | Mar 12 2025 |
| R-4.3-mac | NOTE | Mar 12 2025 |
Exports:create_irodsiadminiauthicdigetilsimetaimkdiriputipwdiqueryireadRDSirmis_connected_irodsis_irods_demo_runningisaveRDSstop_irods_demouse_irods_demo
Dependencies:askpassbriocallrclicrayoncurldescdiffobjdigestevaluatefsgluehttr2jsonlitelifecyclemagrittropensslpkgbuildpkgloadpraiseprocessxpsR6rappdirsrlangrprojrootsystestthatvctrswaldowithr
Accessing data locally and in iRODS
Rendered fromlocal-irods.Rmdusingknitr::rmarkdownon Mar 12 2025.Last update: 2024-03-15
Started: 2023-07-31
Developing rirods
Rendered fromdevelop.Rmdusingknitr::rmarkdownon Mar 12 2025.Last update: 2024-03-15
Started: 2022-11-13
rirods vs iCommands
Rendered fromicommands.Rmdusingknitr::rmarkdownon Mar 12 2025.Last update: 2024-03-15
Started: 2023-07-31
Use iRODS demo
Rendered fromdemo.Rmdusingknitr::rmarkdownon Mar 12 2025.Last update: 2024-03-15
Started: 2023-07-31
Use iRODS metadata
Rendered frommetadata.Rmdusingknitr::rmarkdownon Mar 12 2025.Last update: 2024-03-15
Started: 2023-07-31
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Coerce to a Data Frame | as.data.frame.irods_df |
| Generate IRODS Configuration File | create_irods |
| The Administration Interface to iRODS | iadmin |
| Authentication Service for an iRODS Zone | iauth |
| Get or Set Current Working Directory in iRODS | icd ipwd |
| Retrieve File or Object from iRODS | iget ireadRDS |
| List iRODS Data Objects and Collections | ils |
| Add or Remove Metadata | imeta |
| Create a New Collection in iRODS | imkdir |
| Save Files and Objects in iRODS | iput isaveRDS |
| Query Data Objects and Collections in iRODS | iquery |
| Remove Data Objects or Collections in iRODS | irm |
| Predicate for iRODS Connectivity | is_connected_irods |
| Predicate for iRODS Demonstration Service State | is_irods_demo_running |
| Print Method for iRODS Data Frame Class. | print.irods_df |
| Run Docker iRODS Demonstration Service | stop_irods_demo use_irods_demo |
