Using the development version
Package: rirods 0.3.0
iRODS Consortium
rirods: R Client for 'iRODS'
The open sourced data management software 'Integrated Rule-Oriented Data System' ('iRODS') offers solutions for the whole data life cycle (<https://irods.org/>). The loosely constructed and highly configurable architecture of 'iRODS' frees the user from strict formatting constraints and single-vendor solutions. This package provides an interface to the 'iRODS' HTTP API, allowing you to manage your data and metadata in 'iRODS' with R. Storage of annotated files and R objects in 'iRODS' ensures findability, accessibility, interoperability, and reusability of data.
Authors:
rirods_0.3.0.tar.gz
rirods_0.3.0.zip(r-4.7-any)rirods_0.3.0.zip(r-4.6-any)rirods_0.3.0.zip(r-4.5-any)
rirods_0.3.0.tgz(r-4.6-any)rirods_0.3.0.tgz(r-4.5-any)
rirods_0.3.0.tar.gz(r-4.7-any)rirods_0.3.0.tar.gz(r-4.6-any)
rirods_0.3.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
rirods/json (API)
| # Install 'rirods' in R: |
| install.packages('rirods', repos = c('https://irods.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/irods/irods_client_library_rirods/issues
Pkgdown/docs site:https://rirods.irods4r.org
Last updated from:5c8b9519ea. Checks:7 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | NOTE | 156 | ||
| source / vignettes | OK | 189 | ||
| linux-release | NOTE | 160 | ||
| macos-release | NOTE | 168 | ||
| macos-oldrel | NOTE | 137 | ||
| windows-devel | NOTE | 85 | ||
| windows-release | NOTE | 123 | ||
| windows-oldrel | NOTE | 78 | ||
| wasm-release | OK | 130 |
Exports:create_irodsiadminiauthicdigetilsimetaimkdiriputipwdiqueryireadRDSirmis_connected_irodsis_irods_demo_runningisaveRDSstop_irods_demouse_irods_demo
Dependencies:askpassbriocallrclicrayoncurldescdiffobjevaluatefsgluehttr2jsonlitelifecyclemagrittropensslotelpkgbuildpkgloadpraiseprocessxpsR6rappdirsrlangrprojrootsystestthatvctrswaldowithr
Use iRODS demo
Last update: 2026-07-29
Started: 2023-07-31
Accessing data locally and in iRODS
Set and change working directory | Create directories | Save data | Read data | Remove data
Last update: 2024-03-15
Started: 2023-07-31
Developing rirods
Contributing to rirods development | Prerequisites R | Prerequisites iRODS | Local server | Remote server
Last update: 2024-03-15
Started: 2022-11-13
rirods vs iCommands
Working directory and collections | Creating and deleting collections or data objects | Getting and putting data | Metadata and querying
Last update: 2024-03-15
Started: 2023-07-31
Use iRODS metadata
Setup | Metadata in iRODS | Multiple operations for one item | Working with multiple items | Collections | Querying
Last update: 2024-03-15
Started: 2023-07-31
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Coerce to a Data Frame | as.data.frame.irods_df |
| Generate IRODS Configuration File | create_irods |
| The Administration Interface to iRODS | iadmin |
| Authentication Service for an iRODS Zone | iauth |
| Get or Set Current Working Directory in iRODS | icd ipwd |
| Retrieve File or Object from iRODS | iget ireadRDS |
| List iRODS Data Objects and Collections | ils |
| Add or Remove Metadata | imeta |
| Create a New Collection in iRODS | imkdir |
| Save Files and Objects in iRODS | iput isaveRDS |
| Query Data Objects and Collections in iRODS | iquery |
| Remove Data Objects or Collections in iRODS | irm |
| Predicate for iRODS Connectivity | is_connected_irods |
| Predicate for iRODS Demonstration Service State | is_irods_demo_running |
| Print Method for iRODS Data Frame Class. | print.irods_df |
| Run Docker iRODS Demonstration Service | stop_irods_demo use_irods_demo |